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Starred repositories

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Sidechain conditioning and modeling for full-atom protein sequence design

Python 81 11 Updated Feb 28, 2025

Tool for robust segmentation of >100 important anatomical structures in CT images

Python 10 1 Updated Apr 17, 2024

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

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FlashMLA: Efficient MLA decoding kernels

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Scaling Data-Constrained Language Models

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A trainable PyTorch reproduction of AlphaFold 3.

Python 1,005 100 Updated Mar 21, 2025

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

Python 8,803 362 Updated Feb 9, 2025

Code for the ProteinMPNN paper

Jupyter Notebook 1,203 335 Updated Aug 14, 2024
Python 1,810 207 Updated Mar 13, 2025
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High-quality implementations of standard and SOTA methods on a variety of tasks.

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An efficient, flexible and full-featured toolkit for fine-tuning LLM (InternLM2, Llama3, Phi3, Qwen, Mistral, ...)

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SOTA medical image segmentation methods based on various challenges

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A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. All in a modern, AI-native editor.

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SSH connection manager

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:octocat: Browser extension that simplifies the GitHub interface and adds useful features

TypeScript 26,068 1,528 Updated Mar 19, 2025

A networkx backend that uses joblib to run graph algorithms in parallel.

Python 50 28 Updated Dec 20, 2024

The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…

Jupyter Notebook 14,624 1,545 Updated Dec 25, 2024

The code of "Improving Deep Regression with Ordinal Entropy" in ICLR 2023

Python 46 6 Updated Sep 15, 2023

Official codebase used to develop Vision Transformer, SigLIP, MLP-Mixer, LiT and more.

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Awesome-LLM: a curated list of Large Language Model

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Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.

Python 73 5 Updated Jun 23, 2024

GitHub notifications on your menu bar. Available on macOS, Windows & Linux.

TypeScript 4,673 268 Updated Mar 21, 2025

Dataset and package for working with protein-protein interactions in 3D

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Aligning protein generative models with experimental fitness

Python 88 7 Updated Oct 20, 2024

🟩⬜ Generates a snake game from a github user contributions graph and output a screen capture as animated svg or gif

TypeScript 4,747 1,318 Updated Feb 21, 2025
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