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Releases: nextstrain/nextclade_data

2025-03-26--14-04-54Z

26 Mar 14:05
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2025-03-26--14-04-54Z
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This release contains changes for datasets:

  • PRRSV-1 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)

PRRSV-1 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)

  • Clarified dataset name as PRRSV-1 ORF5
  • Removed 'X' marking Lelystad as a vaccine
Assets 3
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2025-03-26--11-47-13Z

26 Mar 11:47
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2025-03-26--11-47-13Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
  • Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)
  • Mpox virus (Clade I) (nextstrain/mpox/clade-i)
  • Measles N450 (WHO-2012) (nextstrain/measles/N450/WHO-2012)
  • Yellow fever virus (YFV) prM-E region (nextstrain/yellow-fever/prM-E)
  • PRRSV-1 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)
  • PRRSV-2 ORF5 Lineages, Yim-im & Zhang 2023 Microbiol Spectr (community/isuvdl/mazeller/prrsv2/orf5/yimim2023)
  • DENV-1 (community/v-gen-lab/dengue/denv1)
  • DENV-2 (community/v-gen-lab/dengue/denv2)
  • DENV-3 (community/v-gen-lab/dengue/denv3)
  • DENV-4 (community/v-gen-lab/dengue/denv4)
  • Orthomarburgvirus marburgense (community/genspectrum/marburg/HK1980/all-lineages)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

Fix GFF3 format issues in genome annotation

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

Fix GFF3 format issues in genome annotation

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

Fix GFF3 format issues in genome annotation

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

Fix GFF3 format issues in genome annotation

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

Fix GFF3 format issues in genome annotation

Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)

Fix GFF3 format issues in genome annotation

Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)

Fix GFF3 format issues in genome annotation

Mpox virus (Clade I) (nextstrain/mpox/clade-i)

Fix GFF3 format issues in genome annotation

Measles N450 (WHO-2012) (nextstrain/measles/N450/WHO-2012)

Fix GFF3 format issues in genome annotation

Yellow fever virus (YFV) prM-E region (nextstrain/yellow-fever/prM-E)

Fix GFF3 format issues in genome annotation

PRRSV-1 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)

Fix GFF3 format issues in genome annotation

PRRSV-2 ORF5 Lineages, Yim-im & Zhang 2023 Microbiol Spectr (community/isuvdl/mazeller/prrsv2/orf5/yimim2023)

Fix GFF3 format issues in genome annotation

DENV-1 (community/v-gen-lab/dengue/denv1)

Fix GFF3 format issues in genome annotation

DENV-2 (community/v-gen-lab/dengue/denv2)

Fix GFF3 format issues in genome annotation

DENV-3 (community/v-gen-lab/dengue/denv3)

Fix GFF3 format issues in genome annotation

DENV-4 (community/v-gen-lab/dengue/denv4)

Fix GFF3 format issues in genome annotation

Orthomarburgvirus marburgense (community/genspectrum/marburg/HK1980/all-lineages)

Fix GFF3 format issues in genome annotation

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2025-03-12--21-00-00Z

12 Mar 21:00
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2025-03-12--21-00-00Z
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2025-03-12--21-00-00Z

This release contains changes for datasets:

  • PRRSV-1 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)

PRRSV-1 (community/isuvdl/mazeller/prrsv1/orf5/yimim2025)

Initial release.

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2025-03-04--17-31-25Z

04 Mar 17:31
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2025-03-04--17-31-25Z
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2025-03-04--17-31-25Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

Automated update

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

Automated update

RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)

  • designate new lineage B.D.4.1.2 and B.D.4.1.3. The former is an older group that doesn't seem to circulating at the moment, but is added for consistency
  • designate lineages B.D.E.1.2-6: these are several recent groups defined to break up the dominant B.D.E.1 lineage
  • designate lineage B.D.E.5: this is a small group with several substitutions in the F-protein.
  • update with new sequence data
  • remove deprecated G-clades
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2025-02-25--17-00-40Z

25 Feb 17:00
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This release contains changes for datasets:

  • Influenza B(Vic) PA (segment 3) (nextstrain/flu/vic/pa)
  • Influenza B(Vic) PB1 (segment 1) (nextstrain/flu/vic/pb1)
  • Influenza B(Vic) NP (segment 5) (nextstrain/flu/vic/np)
  • Influenza B(Vic) MP (segment 7) (nextstrain/flu/vic/mp)
  • Influenza B(Vic) PB2 (segment 2) (nextstrain/flu/vic/pb2)
  • Influenza B(Vic) NS (segment 8) (nextstrain/flu/vic/ns)

Influenza B(Vic) PA (segment 3) (nextstrain/flu/vic/pa)

Initial release of all segments for Influenza B(Vic). Datasets for segments other than HA and NA are "reference-only" and are based on B/Brisbane/2008.

Influenza B(Vic) PB1 (segment 1) (nextstrain/flu/vic/pb1)

Initial release of all segments for Influenza B(Vic). Datasets for segments other than HA and NA are "reference-only" and are based on B/Brisbane/2008.

Influenza B(Vic) NP (segment 5) (nextstrain/flu/vic/np)

Initial release of all segments for Influenza B(Vic). Datasets for segments other than HA and NA are "reference-only" and are based on B/Brisbane/2008.

Influenza B(Vic) MP (segment 7) (nextstrain/flu/vic/mp)

Initial release of all segments for Influenza B(Vic). Datasets for segments other than HA and NA are "reference-only" and are based on B/Brisbane/2008.

Influenza B(Vic) PB2 (segment 2) (nextstrain/flu/vic/pb2)

Initial release of all segments for Influenza B(Vic). Datasets for segments other than HA and NA are "reference-only" and are based on B/Brisbane/2008.

Influenza B(Vic) NS (segment 8) (nextstrain/flu/vic/ns)

Initial release of all segments for Influenza B(Vic). Datasets for segments other than HA and NA are "reference-only" and are based on B/Brisbane/2008.

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2025-01-30--18-05-53Z

30 Jan 18:06
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2025-01-30--18-05-53Z
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2025-01-30--18-05-53Z

This release contains changes for datasets:

  • H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)
  • H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)
  • H5Nx clade 2.3.2.1 (community/moncla-lab/iav-h5/ha/2.3.2.1)

H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

Updates to README, adding reference to the bioRxiv preprint on A(H5) Nextclade datasets (https://doi.org/10.1101/2025.01.07.631789) and changes for consistency with the preprint

H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)

Updates to README, adding reference to the bioRxiv preprint on A(H5) Nextclade datasets (https://doi.org/10.1101/2025.01.07.631789) and changes for consistency with the preprint

H5Nx clade 2.3.2.1 (community/moncla-lab/iav-h5/ha/2.3.2.1)

Updates to README, adding reference to the bioRxiv preprint on A(H5) Nextclade datasets (https://doi.org/10.1101/2025.01.07.631789) and changes for consistency with the preprint

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2025-01-28--16-39-09Z

28 Jan 16:39
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2025-01-28--16-39-09Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add newly designated Nextstrain clade 25A (LP.8.1)
  • Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEK.1 (2024-12-10)
  • XEK.1.1 (2024-12-10)
  • XEK.2 (2024-12-10)
  • XEK.3 (2024-12-10)
  • XEQ (2024-12-10)
  • LP.11 (2024-12-10)
  • LP.8.2.1 (2024-12-10)
  • LP.8.1.1 (2024-12-10)
  • XEC.8 (2024-12-10)
  • XEC.9 (2024-12-10)
  • XEC.10 (2024-12-10)
  • XEC.11 (2024-12-10)
  • XEC.2.1 (2024-12-10)
  • XEC.2.2 (2024-12-10)
  • XEC.2.3 (2024-12-10)
  • XEC.2.3.1 (2024-12-10)
  • XEC.12 (2024-12-10)
  • LF.7.3.1 (2024-12-10)
  • MV.1.1 (2024-12-10)
  • MU.2.1.1 (2024-12-10)
  • MU.1.1 (2024-12-10)
  • MU.4 (2024-12-10)
  • MU.5 (2024-12-10)
  • MC.23 (2024-12-10)
  • XEC.13 (2024-12-11)
  • MC.24 (2024-12-11)
  • MC.25 (2024-12-11)
  • MC.26 (2024-12-11)
  • MC.26.1 (2024-12-11)
  • MC.27 (2024-12-11)
  • MC.28 (2024-12-11)
  • MC.28.1 (2024-12-11)
  • MC.1.2 (2024-12-11)
  • XEC.14 (2024-12-11)
  • MC.13.3 (2024-12-11)
  • LB.1.3.4 (2024-12-11)
  • LP.10.1.1 (2024-12-18)
  • KP.2.3.14 (2024-12-18)
  • JN.1.68.1 (2024-12-18)
  • LP.8.1.2 (2024-12-18)
  • KP.3.1.11 (2024-12-18)
  • KP.3.1.12 (2024-12-18)
  • NR.1 (2024-12-18)
  • NS.1 (2024-12-18)
  • NS.1.1 (2024-12-18)
  • NS.1.2 (2024-12-18)
  • NS.2 (2024-12-18)
  • MT.1.1 (2024-12-18)
  • NF.1.1 (2024-12-18)
  • NS.3 (2024-12-18)
  • ND.2.1 (2024-12-18)
  • ND.1.1.1 (2024-12-18)
  • ND.1.1.2 (2024-12-18)
  • XEJ.1 (2024-12-18)
  • XEJ.2 (2024-12-18)
  • XEJ.3 (2024-12-18)
  • XEK.4 (2024-12-18)
  • NT.1 (2024-12-18)
  • LF.7.5 (2024-12-18)
  • XEC.15 (2024-12-18)
  • KS.2 (2024-12-18)
  • XER (2024-12-18)
  • XEC.16 (2024-12-18)
  • NU.1 (2024-12-18)
  • XES (2024-12-18)
  • MC.1.3 (2024-12-18)
  • MC.1.3.1 (2024-12-18)
  • KP.2.3.15 (2024-12-18)
  • KP.2.6.2 (2024-12-18)
  • KP.2.6.3 (2024-12-18)
  • NB.1.1 (2024-12-18)
  • LF.7.6 (2024-12-18)
  • LF.7.6.1 (2024-12-18)
  • MC.19.1 (2024-12-19)
  • KP.3.3.5 (2024-12-20)
  • NV.1 (2024-12-20)
  • XET (2024-12-20)
  • XEU (2024-12-20)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add newly designated Nextstrain clade 25A (LP.8.1)
  • Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEK.1 (2024-12-10)
  • XEK.1.1 (2024-12-10)
  • XEK.2 (2024-12-10)
  • XEK.3 (2024-12-10)
  • XEQ (2024-12-10)
  • LP.11 (2024-12-10)
  • LP.8.2.1 (2024-12-10)
  • LP.8.1.1 (2024-12-10)
  • XEC.8 (2024-12-10)
  • XEC.9 (2024-12-10)
  • XEC.10 (2024-12-10)
  • XEC.11 (2024-12-10)
  • XEC.2.1 (2024-12-10)
  • XEC.2.2 (2024-12-10)
  • XEC.2.3 (2024-12-10)
  • XEC.2.3.1 (2024-12-10)
  • XEC.12 (2024-12-10)
  • LF.7.3.1 (2024-12-10)
  • MV.1.1 (2024-12-10)
  • MU.2.1.1 (2024-12-10)
  • MU.1.1 (2024-12-10)
  • MU.4 (2024-12-10)
  • MU.5 (2024-12-10)
  • MC.23 (2024-12-10)
  • XEC.13 (2024-12-11)
  • MC.24 (2024-12-11)
  • MC.25 (2024-12-11)
  • MC.26 (2024-12-11)
  • MC.26.1 (2024-12-11)
  • MC.27 (2024-12-11)
  • MC.28 (2024-12-11)
  • MC.28.1 (2024-12-11)
  • MC.1.2 (2024-12-11)
  • XEC.14 (2024-12-11)
  • MC.13.3 (2024-12-11)
  • LB.1.3.4 (2024-12-11)
  • LP.10.1.1 (2024-12-18)
  • KP.2.3.14 (2024-12-18)
  • JN.1.68.1 (2024-12-18)
  • LP.8.1.2 (2024-12-18)
  • KP.3.1.11 (2024-12-18)
  • KP.3.1.12 (2024-12-18)
  • NR.1 (2024-12-18)
  • NS.1 (2024-12-18)
  • NS.1.1 (2024-12-18)
  • NS.1.2 (2024-12-18)
  • NS.2 (2024-12-18)
  • MT.1.1 (2024-12-18)
  • NF.1.1 (2024-12-18)
  • NS.3 (2024-12-18)
  • ND.2.1 (2024-12-18)
  • ND.1.1.1 (2024-12-18)
  • ND.1.1.2 (2024-12-18)
  • XEJ.1 (2024-12-18)
  • XEJ.2 (2024-12-18)
  • XEJ.3 (2024-12-18)
  • XEK.4 (2024-12-18)
  • NT.1 (2024-12-18)
  • LF.7.5 (2024-12-18)
  • XEC.15 (2024-12-18)
  • KS.2 (2024-12-18)
  • XER (2024-12-18)
  • XEC.16 (2024-12-18)
  • NU.1 (2024-12-18)
  • XES (2024-12-18)
  • MC.1.3 (2024-12-18)
  • MC.1.3.1 (2024-12-18)
  • KP.2.3.15 (2024-12-18)
  • KP.2.6.2 (2024-12-18)
  • KP.2.6.3 (2024-12-18)
  • NB.1.1 (2024-12-18)
  • LF.7.6 (2024-12-18)
  • LF.7.6.1 (2024-12-18)
  • MC.19.1 (2024-12-19)
  • KP.3.3.5 (2024-12-20)
  • NV.1 (2024-12-20)
  • XET (2024-12-20)
  • XEU (2024-12-20)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Add newly designated Nextstrain clade 25A (LP.8.1)
  • Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEK.1 (2024-12-10)
  • XEK.1.1 (2024-12-10)
  • XEK.2 (2024-12-10)
  • XEK.3 (2024-12-10)
  • XEQ (2024-12-10)
  • LP.11 (2024-12-10)
  • LP.8.2.1 (2024-12-10)
  • LP.8.1.1 (2024-12-10)
  • XEC.8 (2024-12-10)
  • XEC.9 (2024-12-10)
  • XEC.10 (2024-12-10)
  • XEC.11 (2024-12-10)
  • XEC.2.1 (2024-12-10)
  • XEC.2.2 (2024-12-10)
  • XEC.2.3 (2024-12-10)
  • XEC.2.3.1 (2024-12-10)
  • XEC.12 (2024-12-10)
  • LF.7.3.1 (2024-12-10)
  • MV.1.1 (2024-12-10)
  • MU.2.1.1 (2024-12-10)
  • MU.1.1 (2024-12-10)
  • MU.4 (2024-12-10)
  • MU.5 (2024-12-10)
  • MC.23 (2024-12-10)
  • XEC.13 (2024-12-11)
  • MC.24 (2024-12-11)
  • MC.25 (2024-12-11)
  • MC.26 (2024-12-11)
  • MC.26.1 (2024-12-11)
  • MC.27 (2024-12-11)
  • MC.28 (2024-12-11)
  • MC.28.1 (2024-12-11)
  • MC.1.2 (2024-12-11)
  • XEC.14 (2024-12-11)
  • MC.13.3 (2024-12-11)
  • LB.1.3.4 (2024-12-11)
  • LP.10.1.1 (2024-12-18)
  • KP.2.3.14 (2024-12-18)
  • JN.1.68.1 (2024-12-18)
  • LP.8.1.2 (2024-12-18)
  • KP.3.1.11 (2024-12-18)
  • KP.3.1.12 (2024-12-18)
  • NR.1 (2024-12-18)
  • NS.1 (2024-12-18)
  • NS.1.1 (2024-12-18)
  • NS.1.2 (2024-12-18)
  • NS.2 (2024-12-18)
  • MT.1.1 (2024-12-18)
  • NF.1.1 (2024-12-18)
  • NS.3 (2024-12-18)
  • ND.2.1 (2024-12-18)
  • ND.1.1.1 (2024-12-18)
  • ND.1.1.2 (2024-12-18)
  • XEJ.1 (2024-12-18)
  • XEJ.2 (2024-12-18)
  • XEJ.3 (2024-12-18)
  • XEK.4 (2024-12-18)
  • NT.1 (2024-12-18)
  • LF.7.5 (2024-12-18)
  • XEC.15 (2024-12-18)
  • KS.2 (2024-12-18)
  • XER (2024-12-18)
  • XEC.16 (2024-12-18)
  • NU.1 (2024-12-18)
  • XES (2024-12-18)
  • MC.1.3 (2024-12-18)
  • MC.1.3.1 (2024-12-18)
  • KP.2.3.15 (2024-12-18)
  • KP.2.6.2 (2024-12-18)
  • KP.2.6.3 (2024-12-18)
  • NB.1.1 (2024-12-18)
  • LF.7.6 (2024-12-18)
  • LF.7.6.1 (2024-12-18)
  • MC.19.1 (2024-12-19)
  • KP.3.3.5 (2024-12-20)
  • NV.1 (2024-12-20)
  • XET (2024-12-20)
  • XEU (2024-12-20)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Add newly designated Nextstrain clade 25A (LP.8.1)
  • Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEK.1 (2024-12-10)
  • XEK.1.1 (2024-12-10)
  • XEK.2 (2024-12-10)
  • XEK.3 (2024-12-10)
  • XEQ (2024-12-10)
  • LP.11 (2024-12-10)
  • LP.8.2.1 (2024-12-10)
  • LP.8.1.1 (2024-12-10)
  • XEC.8 (2024-12-10)
  • XEC.9 (2024-12-10)
  • XEC.10 (2024-12-10)
  • XEC.11 (2024-12-10)
  • XEC.2.1 (2024-12-10)
  • XEC.2.2 (2024-12-10)
  • XEC.2.3 (2024-12-10)
  • XEC.2.3.1 (2024-12-10)
  • XEC.12 (2024-12-10)
  • LF.7.3.1 (2024-12-10)
  • MV.1.1 (2024-12-10)
  • MU.2.1.1 (2024-12-10)
  • MU.1.1 (2024-12-10)
  • MU.4 (2024-12-10)
  • MU.5 (2024-12-10)
  • MC.23 (2024-12-10)
  • XEC.13 (2024-12-11)
  • MC.24 (2024-12-11)
  • MC.25 (2024-12-11)
  • MC.26 (2024-12-11)
  • MC.26.1 (2024-12-11)
  • MC.27 (2024-12-11)
  • MC.28 (2024-12-11)
  • MC.28.1 (2024-12-11)
  • MC.1.2 (2024-12-11)
  • XEC.14 (2024-12-11)
  • MC.13.3 (2024-12-11)
  • LB.1.3.4 (2024-12-11)
  • LP.10.1.1 (2024-12-18)
  • KP.2.3.14 (2024-12-18)
  • JN.1.68.1 (2024-12-18)
  • LP.8.1.2 (2024-12-18)
  • KP.3.1.11 (2024-12-18)
  • KP.3.1.12 (2024-12-18)
  • NR.1 (2024-12-18)
  • NS.1 (2024-12-18)
  • NS.1.1 (2024-12-18)
  • NS.1.2 (2024-12-18)
  • NS.2 (2024-12-18)
  • MT.1.1 (2024-12-18)
  • NF.1.1 (2024-12-18)
  • NS.3 (2024-12-18)
  • ND.2.1 (2024-12-18)
  • ND.1.1.1 (2024-12-18)
  • ND.1.1.2 (2024-12-18)
  • XEJ.1 (2024-12-18)
  • XEJ.2 (2024-12-18)
  • XEJ.3 (2024-12-18)
  • XEK.4 (2024-12-18)
  • NT.1 (2024-12-18)
  • LF.7.5 (2024-12-18)
  • XEC.15 (2024-12-18)
  • KS.2 (2024-12-18)
  • XER (2024-12-18)
  • XEC.16 (2024-12-18)
  • NU.1 (2024-12-18)
  • XES (2024-12-18)
  • MC.1.3 (2024-12-18)
  • MC.1.3.1 (2024-12-18)
  • KP.2.3.15 (2024-12-18)
  • KP.2.6.2 (2024-12-18)
  • KP.2.6.3 (2024-12-18)
  • NB.1.1 (2024-12-18)
  • LF.7.6 (2024-12-18)
  • LF.7.6.1 (2024-12-18)
  • MC.19.1 (2024-12-19)
  • KP.3.3.5 (2024-12-20)
  • NV.1 (2024-12-20)
  • XET (2024-12-20)
  • XEU (2024-12-20)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Add newly designated Nextstrain clade 25A (LP.8.1)
  • Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEK.1 (2024-12-10)
  • XEK.1.1 (2024-12-10)
  • XEK.2 (2024-12-10)
  • XEK.3 (2024-12-10)
  • XEQ (2024-12-10)
  • LP.11 (2024-12-10)
  • LP.8.2.1 (2024-12-10)
  • LP.8.1.1 (2024-12-10)
  • XEC.8 (2024-12-10)
  • XEC.9 (2024-12-10)
  • XEC.10 (2024-12-10)
  • XEC.11 (2024-12-10)
  • XEC.2.1 (2024-12-10)
  • XEC.2.2 (2024-12-10)
  • XEC.2.3 (2024-12-10)
  • XEC.2.3.1 (2024-12-10)
  • XEC.12 (2024-12-10)
  • LF.7.3.1 (2024-12-10)
  • MV.1.1 (2024-12-10)
  • MU.2.1.1 (2024-12-10)
  • MU.1.1 (2024-12-10)
  • MU.4 (2024-12-10)
  • MU.5 (2024-12-10)
  • MC.23 (2024-12-10)
  • XEC.13 (2024-12-11)
  • MC.24 (2024-12-11)
  • MC.25 (2024-12-11)
  • MC.26 (2024-12-11)
  • MC.26.1 (2024-12-11)
  • MC.27 (2024-12-11)
  • MC.28 (2024-12-11)
  • MC.28.1 (2024-12-11)
  • MC.1.2 (2024-12-11)
  • XEC.14 (2024-12-11)
  • MC.13.3 (2024-12-11)
  • LB.1.3.4 (2024-12-11)
  • LP.10.1.1 (2024-12-18)
  • KP.2.3.14 (2024-12-18)
  • JN.1.68...
Read more
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2025-01-22--09-54-14Z

22 Jan 09:54
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2025-01-22--09-54-14Z
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2025-01-22--09-54-14Z

This release contains changes for datasets:

  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
  • Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
  • Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)
  • Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
  • Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)

  • include subclades C.1.9.1 - C.1.9.4 based on subclade proposals C.1.9.a/b/c/d

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)

  • include subclades C.1.9.1 - C.1.9.4 based on subclade proposals C.1.9.a/b/c/d

Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)

  • update reference trees

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)

  • update reference trees

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

  • update reference trees

Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)

  • update reference trees

Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)

  • update reference trees

Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)

  • update reference trees
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2025-01-09--08-17-24Z

09 Jan 08:17
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2025-01-09--08-17-24Z
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2025-01-09--08-17-24Z

This release contains changes for datasets:

  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
  • Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)

  • add subclade proposals C.1.9.a/b/c/d

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)

  • add subclade proposals C.1.9.a/b/c/d

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)

  • include subclade proposals for J.2.a/b/c/d/e

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

  • include subclade proposals for J.2.a/b/c/d/e

Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)

  • update reference tree
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2024-12-04--17-05-31Z

04 Dec 17:05
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This release contains changes for datasets:

  • Human Metapneumovirus (nextstrain/hmpv/all-clades/NC_039199)
  • H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)
  • H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)

Human Metapneumovirus (nextstrain/hmpv/all-clades/NC_039199)

Initial release of the dataset.

H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences.

H5Nx (all clades) (community/moncla-lab/iav-h5/ha/all-clades)

Updated private mutation QC metrics such that the typical value is the median value and the cutoff is the 97.5th percentile of private mutation counts assigned to unique GISAID sequences.

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