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@nmfs-ost

Office of Science & Technology at NOAA Fisheries

Providing the science behind how we manage sustainable fisheries, protected species, and healthy ecosystems.

NOAA Fisheries - Office of Science and Technology

This GitHub organization is for members of the Office of Science and Technology (OST) and their collaborators. It also houses repositories for the Office of Protected Resources (OPR) and NOAA Fisheries Advanced Technologies Strategic Initiatives.

How to find repositories?

Click on repositories tab and search for a topic (stock-assessment, ggt, etc.) or program (e.g. the national stock assessment program, NSAP).

Topics or repository prefixes denoting specific collections of repositories include:

  • AA - Active Acoustics
  • FIT - The NOAA Fisheries Integrated Toolbox
  • pam - Passive Acoustics Monitoring
  • stock-synthesis

I'm NOAA staff - how do I request write access to this organization?

See the GitHub Governance Team intranet (NOAA internal only) for instructions.

Disclaimer

The repositories in this GitHub org are scientific products and are not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government

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  1. ss3-source-code ss3-source-code Public

    The source code for Stock Synthesis (SS3).

    C++ 40 18

  2. ss3-doc ss3-doc Public

    Source code for the Stock Synthesis manual and other documentation

    TeX 3 2

  3. ss3-user-examples ss3-user-examples Public

    Stock synthesis example models for users

    Scheme 1 5

  4. ss3-test-models ss3-test-models Public

    Stock Synthesis models used for testing

    Scheme 3 1

  5. ss3-ssi ss3-ssi Public

    The source code for Stock Synthesis Interface (SSI), the Stock Synthesis GUI

    C++ 2

Repositories

Showing 10 of 70 repositories
  • FIT-status Public

    nmfs-fish-tools status dashboard based on https://github.com/espinielli/status

    nmfs-ost/FIT-status’s past year of commit activity
    R 2 0 1 0 Updated Apr 7, 2025
  • ss3-source-code Public

    The source code for Stock Synthesis (SS3).

    nmfs-ost/ss3-source-code’s past year of commit activity
    C++ 40 CC0-1.0 18 112 2 Updated Apr 4, 2025
  • DisMAP Public

    The Distribution Mapping and Analysis Portal is a national web application which displays spatial distribution data for over 400 marine fish and macroinvertebrates

    nmfs-ost/DisMAP’s past year of commit activity
    Python 4 1 2 0 Updated Apr 4, 2025
  • stockplotr Public

    R package that contains general tables and figures such as standard objects in an assessment report, and other important visualizations to interpret results of stock assessment models.

    nmfs-ost/stockplotr’s past year of commit activity
    R 3 3 13 7 Updated Apr 4, 2025
  • nmfs-ost/Genomics_Resources’s past year of commit activity
    Nextflow 3 1 0 0 Updated Apr 3, 2025
  • .github Public
    nmfs-ost/.github’s past year of commit activity
    0 0 1 1 Updated Apr 3, 2025
  • PAM-minke-whale-detector_batch-processing_linux Public Forked from xaviermouy/minke-whale-detector_batch-processing_linux

    Minke detector running in batch mode (with processing queue) in a linux environment. Developer: Xavier Mouy

    nmfs-ost/PAM-minke-whale-detector_batch-processing_linux’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Apr 3, 2025
  • asar Public

    Partially automate a U.S. stock assessment report.

    nmfs-ost/asar’s past year of commit activity
    R 21 MIT 3 11 (1 issue needs help) 4 Updated Apr 2, 2025
  • AA-SI_PublicPage Public

    Public-facing information about the Active Acoustics Strategic Initiative

    nmfs-ost/AA-SI_PublicPage’s past year of commit activity
    Lua 0 CC0-1.0 0 0 0 Updated Apr 2, 2025
  • AA-SI_main Public
    nmfs-ost/AA-SI_main’s past year of commit activity
    2 Apache-2.0 1 0 0 Updated Apr 1, 2025

People

This organization has no public members. You must be a member to see who’s a part of this organization.

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