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[EXPERIMENTAL]: Integrate cp-measure #982

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@timtreis timtreis commented Mar 28, 2025

@timtreis timtreis marked this pull request as draft March 28, 2025 16:52
@timtreis timtreis added enhancement ✨ New feature or request image 🔬 squidpy2.0 Everything releated to a Squidpy 2.0 release sdata compat 🌌 release-added labels Mar 28, 2025
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timtreis commented May 16, 2025

Note to self:

  • Doesn't correctly parse str names of channels
    INFO Calculating 'cpmeasure' correlation features between channels '0' and '1'.

  • Should show, for permutations, the total number of iterations (in general, the progress bar should contain a (step n out m) readout so one can know how far in the featurisation is. Can easily take more than a day given the amount of cells and cpu_cores. Should also maybe show the total runtime so far for the steps that are done

  • Fails if labels and image don't have the same dimensions, despite transformation to align them

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