otbasscap-data

Summary HTML docs

• Initial summary of existing paradigm link

• Assessment of attainment with hypothetical chlorophyll upper limits link

• GLM of monthly chlorophyll attainment for sug-segments link

• Explanation of monthly load data assignment to OTB subsegments link

• Load change projection link

• CASM fit evaluation link

• Load change projection all segments for box model link

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./data/winwq.RData

Water quality data retrieved from FDEP WIN database (https://prodenv.dep.state.fl.us/DearWin/public/welcomeGeneralPublic). Raw data files stored on Google Drive were processed by ./R/dat_proc.R.

Search query:

• Requested report - WIN WAVES
• PRIMARY TYPE = Surface Water
• ACTIVITY TYPE = Field, Sample
• DEP ANALYTE GROUP = General Physical-Chemical, Oxygen Demand, Field Observation, Biological, Nutrients
• COUNTY = HILLSBOROUGH, FLORIDA, PASCO, FLORIDA, PINELLAS, FLORIDA
• Report Run on APRIL 5, 2024

./data/epcwq.RData

Water quality data from Hillsborough County Environmental Protection Commission (https://epcbocc.sharepoint.com/sites/Share/Shared%20Documents/Forms/AllItems.aspx?id=%2Fsites%2FShare%2FShared%20Documents%2FOutbound%2FERM%2FWQM%5FReports&p=true&ga=1). Raw data files stored on Google Drive were processed by ./R/dat_proc.R.

./data/sg.RData

Seagrass transect data for Tampa Bay, obtained from the Tampa Bay Estuary Program via the tbeptools API:

• sg_dat: transect data (returned by tbeptools::read_transect())
• sg_lines: transect locations (returned by tbeptools::trnlns)
• sg_pts: transect points (returned by tbeptools::trnpts)

./data-raw/DataDownload_2999342_row.csv

Water quality data for Old Tampa Bay monitoring strata, obtained from Pinellas County Water Atlas (https://pinellas.wateratlas.usf.edu/datadownload).

Search query:

• Data Type: Surface water quality
• Water Atlas: Pinellas County Water Atlas
• Date Range: 2000-01-01 to 2024-04-08
• Parameter: BOD, Biochemical oxygen demand; Chlorophyll (a+b+c); Chlorophyll a (probe relative fluorescence); Chlorophyll a, uncorrected for pheophytin; Chlorophyll a, corrected for pheophytin; Chlorophyll b; Chlorophyll c; Chlorophyll/Pheophytin ratio; Dissolved oxygen (DO); Dissolved oxygen saturation; Nitrogen, inorganic; Nitrogen, ammonia as N; Nitrogen, ammonia as N; Nitrogen, ammonia as N; Nitrogen, ammonia (NH3) as NH3; Nitrogen, ammonia (NH3) as NH3; Nitrogen, ammonia (NH3) + ammonium (NH4); Nitrogen, ammonium (NH4) as N; Nitrogen, ammonia (NH3) + ammonium (NH4); Nitrogen ion (N); Nitrogen, Nitrite (NO2) as N; Nitrogen, Nitrite (NO2) as N; Nitrogen, Nitrite (NO2) as NO2; Nitrogen, Nitrite (NO2) as NO2; Nitrogen, Nitrite (NO2) as N; Nitrogen, Nitrate (NO3) as N; Nitrogen, Nitrate (NO3) as N; Nitrogen, Nitrate (NO3) as N; Nitrogen, Nitrate (NO3) as NO3; Nitrogen, Nitrate (NO3) as NO3; Nitrogen, Nitrate (NO3) as N; Nitrogen, organic; Nitrogen, organic; Nitrogen, Nitrite (NO2) + Nitrate (NO3) as N; Nitrogen, Nitrite (NO2) + Nitrate (NO3) as N; Salinity; Salinity; Temperature, water; Temperature, water; Nitrogen, Kjeldahl; Nitrogen, Kjeldahl; Nitrogen, mixed forms (NH3)+(NH4)+organic+(NO2)+(NO3); Nitrogen; Nitrogen; Total Suspended Solids (TSS); Turbidity; Turbidity; Turbidity; Velocity - stream.

./data-raw/normalization.xlsx

Excel file visualizes hydrologic normalization of nitrogen loads to Old Tampa Bay, for Task 1 Draft Report (3/29/2024):

• Sheet 1 demonstrates the current linear adjustment procedure and the alternative logistic procedure (Figure 10).
• Sheet 2 visualizes the compliance load adjustment factor over time (Figure 9).

./data-raw/OTB_loads_seagrass.xlsx

Excel file visualizes nitrogen loads and provides proof-of-concept visualization for hysteresis analysis, for Task 1 Draft Report (3/29/2024).

• Sheet 1 contains TBEP's monthly nitrogen load data.
• Sheet 2 contains the OTB subset of data on Sheet 1, a pivot table of load types by year, and calculated percentages for each load type between 2012-2021 (Figure 3).
• Sheet 3 contains TBEP's annual seagrass transect data and N load data, and shows hysteresis-related plots (Figure 7).

./data-raw/TB_hydro_monthly.csv

Tidy dataset for monthly hydrologic loads to Tampa Bay segments, 1985-2021. Retrieved from TBEP (https://tbep.org/tampa-bay-nitrogen-loads/).

Columns:

• year: 1985-2021
• month: 1-12
• bay_segment: All Segments, Hillsborough Bay, Lower Tampa Bay, Middle Tampa Bay, Old Tampa Bay, Remainder Lower Tampa Bay.
• hy_load_106_m3_mo: Hydrologic load (10e6 m3)

./data-raw/TB_loads_monthly.csv

Tidy dataset for monthly TN, TP, TSS & BOD load for Tampa Bay segments, 1995-2021. Retrieved from TBEP (https://tbep.org/tampa-bay-nitrogen-loads/).

Columns:

• year: 1995-2021
• month: 1-12
• bay_segment: All Segments, Hillsborough Bay, Lower Tampa Bay, Middle Tampa Bay, Old Tampa Bay, Remainder Lower Tampa Bay.
• source: AD (atmospheric deposition), DPS (domestic points source), GWS (groundwater), IPS (industrial point source), NPS (nonpoint source).
• tn_load: Total nitrogen load (tons)
• tp_load: Total phosphorus load (tons)
• tss_load: Total suspended solids (tons)
• bod_load: Biological oxygen demand (tons)

./data-raw/fwcpyro20112023.csv

Monthly Pyrodinium bahamense sampling in Old Tampa Bay, 2011-2023. From https://myfwc.com/research/redtide/monitoring/database/, C. Lopez.

Columns:

• yr: Year, 2011-2023
• date: Date of sampling, YYYY-MM-DD
• Latitude: Latitude of sampling location, CRS 4326
• Longitude: Longitude of sampling location, CRS 4326
• pyro: Pyrodinium cell count, cells/L, NA is sampled but not present/detected
• doy: Day of year, 1-365
• pyrocat: Bloom intensity category from cells/L, <= 1e4 No bloom, > 1e4 & <= 1e5 Low, > 1e5 & <= 1e6 Medium, > 1e6 High

./data/otbsub.RData

Approximate boundaries for six sub-segments in OTB. Attribute column subseg defines the sub-segment name in cardinal directions, eg., NW: northwest, etc. CRS WGS 84.

./R/dat_proc.R

Queries raw EPC and WIN data from Google Drive and exports RData to ./data/