Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
CUT&RUN and CUT&Tag data processing and analysis
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
These are tools for post GWAS analysis. Please see below link as a document for install and use.
Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
WashU Epigenome Browser (3rd generation, since 2025)
Add a description, image, and links to the epigenome topic page so that developers can more easily learn about it.
To associate your repository with the epigenome topic, visit your repo's landing page and select "manage topics."