Segmented HAPlotype Estimation and Imputation Tool
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Updated
Aug 16, 2024 - C++
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haplotype
Here are 3 public repositories matching this topic...
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens
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Mar 28, 2025 - C++
*HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection
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Jul 12, 2024 - C++
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