A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
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Mar 20, 2025 - Python
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kallisto
Here are 9 public repositories matching this topic...
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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Mar 19, 2025 - Python
Automated and friendly RNA-seq analysis (deprecated)
python docker automation quality-control rna-seq pipeline analysis portal kallisto alaska analysis-pipeline sleuth
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May 21, 2019 - Python
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
bioinformatics snakemake json-schema conda multiqc kallisto reproducible-workflows fastqc snakemake-workflow
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Aug 23, 2019 - Python
Iso-seq and Kallisto integration
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Jan 29, 2020 - Python
Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.
tsv filter tabular-data stata merge gene-expression msgpack hdf5 parquet pickle transcription arff salmon kallisto transforming-files gct
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Jul 24, 2019 - Python
kallisto indexing and tag extraction
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Jul 12, 2019 - Python
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Nov 7, 2019 - Python
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