Toolkit for discovering and aggregating data for whole-cell modeling
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Jan 19, 2022 - Python
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mathematical-modeling
Here are 21 public repositories matching this topic...
Utilities for building standardized command-line interfaces for biosimulation software packages
python simulation systems-biology computational-biology combine mathematical-modeling sed-ml omex biosimulators kisao
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May 16, 2025 - Python
This repository contains the code and data used in our research, supervised by Dr. Prabir Daripa, to model and analyze the effects of the shear-thinning behavior of polymers and different surfactants on SP-Flooding
fluid-dynamics mathematical-modeling undergraduate-research surfactant-polymer-flooding enhanced-oil-recovery polymer-shear-thinning
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May 14, 2025 - Python
A GUI-tool for computing Nash flows over time with or without spillback as well as (spillback) thin flows.
graph-algorithms optimization python3 game-theory operations-research scip nash-equilibrium network-flow-model mixed-integer-programming traffic-simulation mathematical-modeling dynamic-traffic-assignment flow-over-time
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Feb 25, 2024 - Python
Этот репозиторий содержит материалы для выполнения лабораторных работ по курсу "Моделирование систем" . Здесь вы найдете реализации различных моделей, включая: Моделирование случайных величин. Анализ систем массового обслуживания (СМО). Статистический анализ данных. Сравнение алгоритмов сортировки и другие задачи.
python simulation python3 labs statistical-analysis sorting-algorithms educational-resources mathematical-modeling system-modeling algorithm-implementation queueing-systems random-variable-simulation
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Feb 14, 2025 - Python
Unleash the power of mathematics with this interactive Graph Generator! 🧮📈 Visualize Cartesian, Parametric, Polar, and 3D Surface equations dynamically. Simply enter your mathematical expression, tweak the parameters, and watch your graph come to life! 🚀🎨
data-visualization graph-generator python-math mathematical-modeling parametric-equations polar-coordinates 3d-plotting streamlit-application streamlit-app computational-math math-visualization math-graphs
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Mar 6, 2025 - Python
Implementation is to use gradient descent to find the optimal values of θ that minimize the cost function.
python data-science machine-learning optimization supervised-learning logistic-regression regularization gradient-descent predictive-modeling theta machine-learning-theory statistical-modeling cost-function mathematical-modeling
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Mar 1, 2025 - Python
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
computational-neuroscience combine mathematical-modeling sed-ml neuroml numerical-simulation omex biosimulators
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Feb 22, 2022 - Python
Python + Pyomo implementation of the problems in the book "Model building in mathematical programming" by H. Paul Williams
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Jun 22, 2022 - Python
Software and data associated with the article titled, "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA," Biophys. J. Accepted, (2023). doi:10.1016/j.bpj.2023.03.002
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Oct 4, 2023 - Python
Python library for coordinated planning in two-level systems, finding compromise solutions between a Center and Elements using mathematical models & a GUI.
python gui optimization pyqt5 parallel-computing linear-programming operations-research google-or-tools combinatorial-optimization mathematical-modeling decision-support-systems hierarchical-systems coordinated-planning two-level-systems compromise-planning heuristic-estimates
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May 14, 2025 - Python
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Mar 24, 2025 - Python
🔄 Discover how oscillations emerge as a mathematical necessity in complex systems. A rigorous framework proving C+A=1 with 10^-16 precision. 📊 Visualize adaptability landscapes & spectral fingerprints.
python research mathematics data-visualization scientific-computing dynamical-systems coherence complex-systems conservation-law conservation-laws spectral-analysis academic-paper oscillations mathematical-modeling adaptability theoretical-framework
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May 8, 2025 - Python
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology biochemistry rba combine cell-biology mathematical-modeling sed-ml numerical-simulation omex biosimulators resource-balance-analysis
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Dec 14, 2021 - Python
A relationship of predator and prey population density described using Lotka-Volterra model.
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Jan 28, 2025 - Python
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Aug 28, 2017 - Python
A collection of classes that solve common quantitative biology problems and plot the results via plot.ly
python solver plotly plot mathematical-modelling mathematical-biology phase-plane mathematical-modeling biological-calculations
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Oct 12, 2017 - Python
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
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Jan 3, 2022 - Python
Personal solutions to excercises of Mathematical Modeling (MATH130008.01-2023-2024-2, taught by 蔡志杰 and 张云新)
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Apr 15, 2024 - Python
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