Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

Variant catalogue pipeline

RNAseq analysis pipeline

compare sequences to a shared root reference sequence.

A benchmarks of genomic pipelines running in Docker containers

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

A Reproducible Untargeted Metabolomics Data Processing Pipeline

An example RNA-seq pipeline with Nextflow and using public ENCODE data

Nextflow Workshop at Rocky Mountain Genomics HackCon 2018

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

Nextflow Tutorial - Variant Calling Edition

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Empty template for nextflow pipelines

Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance

Nextflow workflow for basic HiC data processing

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

Our typical analysis steps for WGBS data, starting from FASTQ reads and ending with the construction of bsseq objects. Created using nextflow

Excel report from bioinformatics analysis of viral seq data with nf-core/viralrecon and other Nextflow workflows