Survival analysis in Python

Comparative Genomics Toolkit 3

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

Maximum Likelihood estimation and Simulation for Stochastic Differential Equations (Diffusions)

Gauss Naive Bayes in Python From Scratch.

Ancestral character reconstruction and visualisation for rooted phylogenetic trees

rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

Python package to construct free energy profiles from biased molecular simulation data using both log-likelihood maximization and self-consistent iteration approaches.

Code for the paper "Differentiable Task Graph Learning: Procedural Activity Representation and Online Mistake Detection from Egocentric Videos" [NeurIPS (spotlight), 2024]

Perform template likelihood fits on binned datasets to extract contribution to the dataset from different processes .

X-Metric: An N-Dimensional Information-Theoretic Framework for Groupwise Registration and Deep Combined Computing (TPAMI 2023)

iqtreeGUI - A graphical user interface for IQ-TREE

Provide the automatic differentiation for Likelihood maximization routine

Mnist dataset in specific forms (2,4,6 & 8 labels or mean brightness 2D arrays) was utilized for dimensionality reduction, clustering and classification implementations for educational purposes.

Python package for frontier analysis

HMM from scratch

On the Design and Performance of Machine Learning Based Error Correcting Decoders

Text generation with LSTM and MLC