Escherichia coli Transcriptome Assembly from a Compendium of RNA-seq Data Sets
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Nov 30, 2022 - Python
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operons
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Wonderful O-antigens Operons Finder
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Updated
Sep 30, 2023 - Jupyter Notebook
This repository contains a set of scripts and workflows designed to search for Respiratory Complex I (NADH Ubiquinone Oxidoreductase) subunits in prokaryotic genomes and proteomes.
bioinformatics biopython protein-sequences proteome homology-search mafft mmseqs2 fasttree prokaryotic-genomes hmmer3 species-distribution evalue-thresholds operons iqtree2 protein-sequences-tree
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Mar 10, 2025 - Jupyter Notebook
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